Parcellation¶
![digraph Parcellation{
label="Parcellation";
Parcellation_inputnode[label="inputnode (utility)"];
Parcellation_Parcellate[label="Parcellate (interfaces)"];
Parcellation_FillHoles[label="FillHoles (interfaces)"];
Parcellation_InvertTransformation[label="InvertTransformation (interfaces)"];
Parcellation_Reslice[label="Reslice (interfaces)"];
Parcellation_outputnode[label="outputnode (utility)"];
Parcellation_inputnode -> Parcellation_Parcellate;
Parcellation_inputnode -> Parcellation_Parcellate;
Parcellation_inputnode -> Parcellation_Parcellate;
Parcellation_inputnode -> Parcellation_InvertTransformation;
Parcellation_Parcellate -> Parcellation_FillHoles;
Parcellation_Parcellate -> Parcellation_outputnode;
Parcellation_Parcellate -> Parcellation_outputnode;
Parcellation_FillHoles -> Parcellation_Reslice;
Parcellation_FillHoles -> Parcellation_outputnode;
Parcellation_InvertTransformation -> Parcellation_Reslice;
Parcellation_Reslice -> Parcellation_outputnode;
}](../../_images/graphviz-eaa22be361f7e5001eb335052696adc9cd8d818a.png)
- sbl.sabre.workflows.ParcellationWorkflow(name='Parcellation', *args, **kwargs)¶
Create a parcellation workflow
Parameters: name – Name of workflow Inputs:
Parameters: - inputnode.T1_image_erode – Eroded T1 image
- inputnode.T1_toACPC – Transformation from T1 acquisition space to AC/PC space
- inputnode.lobar_grid – Grid file with coordinates based on the Talairach atlas
- inputnode.lobar_tracing – Lobar tracing
Outputs:
Parameters: - outputnode.parcellation – SABRE parcellation
- outputnode.parcel_grid – Modified grid file with coordinates based on the Talairach atlas