Total Intracranial Vault (TIV) Extraction

sbl.sabre.workflows.TIVExtractionWorkflow(name='ExtractTotalIntracranialVault', template_type='T2')

Create a Total Intracranial Vault (TIV) extraction workflow

Parameters:

• name – Name of workflow (default: “ExtractTotalIntracranialVault”)
• template_type – Type of head-from-brain template to use (‘T2’ or ‘PD’)

Inputs:

inputnode.T2_image : T2 image in T1 acquisition space
inputnode.PD_image : PD image in T1 acquisition space
inputnode.TIV_BET_threshold : BET threshold for registration to template
inputnode.TIV_template : TIV template (PD or T2)
inputnode.TIV_template_mask : TIV template mask
inputnode.T2_threshold :
inputnode.PD_threshold :
inputnode.cutoff :

Outputs:

outputnode.TIV :